| Yachiyo-chuo | Toyo-kosoku | Toyo-kosoku line | Chiba pref. | ”ªç‘ã’†‰› | ç—tŒ§ | |
| Yachiyo-midorigaoka | Toyo-kosoku | Toyo-kosoku line | Chiba pref. | ”ªç‘ã—΂ª‹u | ç—tŒ§ | |
| Yachiyodai | KEISEI | Honsen line | Chiba pref. | KS29 | ”ªç‘ã‘ä | ç—tŒ§ |
| Yagiri | HOKUSO | Hokuso line | Chiba pref. | HS02 | –îØ | ç—tŒ§ |
| Yaguchi-watashi | TOKYU | Tokyu-tamagawa line | Ota ward | TM06 | –îŒû“n | ‘å“c‹æ |
| Yahiro | KEISEI | Oshiage line | Sumida ward | KS47 | ”ªL | –n“c‹æ |
| Yamada | KEIO | Takao line | Tokyo pref. | KO49 | ŽR“c | “Œ‹ž“s |
| Yamagata | JR East | Yamagata shinkansen | Yamagata pref. | ŽRŒ` | ŽRŒ`Œ§ | |
| Yamashita | TOKYU | Setagaya line | Setagaya ward | SG08 | ŽR‰º | ¢“c’J‹æ |
| Yamate | JR East | Negishi line | Kanagawa pref. | ŽRŽè | _“Þ쌧 | |
| Yamato | ODAKYU | Enoshima line | Kanagawa pref. | ‘å˜a | _“Þ쌧 | |
| Yanasegawa | TOBU | Tojo line | Saitama pref. | TJ-15 | –ö£ì | é‹ÊŒ§ |
| Yasaka | SEIBU | Tamako line | Tokyo pref. | ST05 | ”ªâ | “Œ‹ž“s |
| Yashio | Tsukuba Express | Tsukuba Express line | Saitama pref. | 08 | ”ª’ª | é‹ÊŒ§ |
| Yashu-yamabe | TOBU | Isesaki line | Tochigi pref. | TI-16 | –ìBŽR•Ó | “È–ØŒ§ |
| Yatsu | KEISEI | Honsen line | Chiba pref. | KS25 | ’J’à | ç—tŒ§ |
| Yatsuka | TOBU | Isesaki line/Skytree line | Saitama pref. | TS-15 | ’J’Ë | é‹ÊŒ§ |
| Yawatajuku | JR East | Uchibo line | Chiba pref. | ”ª”¦h | ç—tŒ§ | |
| Yazaike | TOEI | Nippori-Toneri liner | Adachi ward | 10 | ’JÝ‰Æ | ‘«—§‹æ |
| Yoga | TOKYU | Denen-toshi line | Setagaya ward | DT06 | —p‰ê | ¢“c’J‹æ |
| Yokodai | JR East | Negishi line | Kanagawa pref. | —mŒõ‘ä | _“Þ쌧 | |
| Yokohama | JR East | Keihin-tohoku line | Kanagawa pref. | ‰¡•l | _“Þ쌧 | |
| Yokohama | JR East | Negishi line | Kanagawa pref. | ‰¡•l | _“Þ쌧 | |
| Yokohama | JR East | Tokaido line | Kanagawa pref. | ‰¡•l | _“Þ쌧 | |
| Yokohama | JR East | Yokosuka line | Kanagawa pref. | ‰¡•l | _“Þ쌧 | |
| Yokohama | JR East | Shonan-shinjuku line | Kanagawa pref. | ‰¡•l | _“Þ쌧 | |
| Yokohama | KEIKYU | Honsen line | Kanagawa pref. | KK37 | ‰¡•l | _“Þ쌧 |
| Yokohama | TOKYU | Toyoko line | Kanagawa pref. | TY21 | ‰¡•l | _“Þ쌧 |
| Yokohama | Minato-mirai | Minato-mirai line | Kanagawa pref. | MM01 | ‰¡•l | _“Þ쌧 |
| Yokosuka | JR East | Yokosuka line | Kanagawa pref. | ‰¡{‰ê | _“Þ쌧 | |
| Yokosuka-chuo | KEIKYU | Honsen line | Kanagawa pref. | KK59 | ‰¡{‰ê’†‰› | _“Þ쌧 |
| Yokoze | SEIBU | Seibu-chichibu line | Saitama pref. | SI35 | ‰¡£ | é‹ÊŒ§ |
| Yomiuri-land-mae | ODAKYU | Odawara line | Kanagawa pref. | “Ç”„ƒ‰ƒ“ƒh‘O | _“Þ쌧 | |
| Yonezawa | JR East | Yamagata shinkansen | Yamagata pref. | •Ä‘ò | ŽRŒ`Œ§ | |
| Yono | JR East | Keihin-tohoku line | Saitama pref. | —^–ì | é‹ÊŒ§ | |
| Yono-honmachi | JR East | Saikyo line | Saitama pref. | —^–ì–{’¬ | é‹ÊŒ§ | |
| Yorii | TOBU | Tojo line | Saitama pref. | TJ-38 | Šñ‹ | é‹ÊŒ§ |
| Yoshikawa | JR East | Musashino line | Saitama pref. | ‹gì | é‹ÊŒ§ | |
| Yotsugi | KEISEI | Oshiage line | Katsushika ward | KS48 | Žlƒc–Ø | Š‹ü‹æ |
| Yotsukaido | JR East | Sobu line | Chiba pref. | ŽlŠX“¹ | ç—tŒ§ | |
| Yotsuya | JR East | Sobu-chuo line | Chiyoda ward | Žlƒb’J | ç‘ã“c‹æ | |
| Yotsuya | JR East | Chuo line | Chiyoda ward | Žlƒb’J | ç‘ã“c‹æ | |
| Yotsuya | Tokyo Metro | Marunouchi line | Shinjuku ward | M-12 | Žlƒb’J | Vh‹æ |
| Yotsuya | Tokyo Metro | Nanboku line | Shinjuku ward | N-08 | Žlƒb’J | Vh‹æ |
| Yotsuya-sanchome | Tokyo Metro | Marunouchi line | Shinjuku ward | M-11 | Žlƒb’JŽO’š–Ú | Vh‹æ |
| Yoyogi | JR East | Yamanote line | Shibuya ward | ‘ãX–Ø | a’J‹æ | |
| Yoyogi | JR East | Sobu-chuo line | Shibuya ward | ‘ãX–Ø | a’J‹æ | |
| Yoyogi | TOEI | Oedo line | Shibuya ward | E-26 | ‘ãX–Ø | a’J‹æ |
| Yoyogi-hachiman | ODAKYU | Odawara line | Shibuya ward | ‘ãX–Ø”ª”¦ | a’J‹æ | |
| Yoyogi-koen | Tokyo Metro | Chiyoda line | Shibuya ward | C-02 | ‘ãX–ØŒö‰€ | a’J‹æ |
| Yoyogi-uehara | Tokyo Metro | Chiyoda line | Shibuya ward | C-01 | ‘ãX–Ø㌴ | a’J‹æ |
| Yoyogi-uehara | ODAKYU | Odawara line | Shibuya ward | ‘ãX–Ø㌴ | a’J‹æ | |
| YRP-nobi | KEIKYU | Kurihama line | Kanagawa pref. | KK68 | YRP–ì”ä | _“Þ쌧 |
| Yuenchi-nishi | SEIBU | Yamaguchi line | Tokyo pref. | SY02 | —V‰€’n¼ | “Œ‹ž“s |
| Yugawara | JR East | Tokaido line | Kanagawa pref. | “’‰ÍŒ´ | _“Þ쌧 | |
| Yukarigaoka | KEISEI | Honsen line | Chiba pref. | KS33 | ƒ†[ƒJƒŠ‚ª‹u | ç—tŒ§ |
| Yukigaya-otsuka | TOKYU | Ikegami line | Ota ward | IK09 | Ⴊ’J‘å’Ë | ‘å“c‹æ |
| Yurakucho | JR East | Yamanote line | Chiyoda ward | —LŠy’¬ | ç‘ã“c‹æ | |
| Yurakucho | JR East | Keihin-tohoku line | Chiyoda ward | —LŠy’¬ | ç‘ã“c‹æ | |
| Yurakucho | Tokyo Metro | Yurakucho line | Chiyoda ward | Y-18 | —LŠy’¬ | ç‘ã“c‹æ |
| Yurigaoka | ODAKYU | Odawara line | Kanagawa pref. | •S‡ƒ–‹u | _“Þ쌧 | |
| Yushima | Tokyo Metro | Chiyoda line | Bunkyo ward | C-13 | “’“‡ | •¶‹ž‹æ |
| Yutenji | TOKYU | Toyoko line | Meguro ward | TY04 | —S“VŽ› | –Ú•‹æ |
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