| Abiko | JR East | Joban line | Chiba pref. | 䑷q | t | |
| Adachi-odai | TOEI | Nippori-Toneri liner | Adachi ward | 05 | ||
| Agano | SEIBU | Seibu-chichibu line | Saitama pref. | SI31 | ʌ | |
| Agata | TOBU | Isesaki line | Tochigi pref. | TI-12 | Ȗ، | |
| Ageo | JR East | Takasaki line | Saitama pref. | ʌ | ||
| Aiko-ishida | ODAKYU | Odawara line | Kanagawa pref. | bΓc | _ސ쌧 | |
| Aioi | JR West | Sanyo shinkansen | Hyogo pref. | Ɍ | ||
| Akabane | JR East | Keihin-tohoku line | Kita ward | ԉH | k | |
| Akabane | JR East | Saikyo line | Kita ward | ԉH | k | |
| Akabane | JR East | Takasaki line | Kita ward | ԉH | k | |
| Akabane | JR East | Tohoku line/Utsunomiya line | Kita ward | ԉH | k | |
| Akabane | JR East | Shonan-shinjuku line | Kita ward | ԉH | k | |
| Akabane-iwabuchi | Tokyo Metro | Nanboku line | Kita ward | N-19 | ԉH╣ | k |
| Akabane-iwabuchi | Saitama-kosoku | Saitama-kosoku line | Kita ward | ԉH╣ | k | |
| Akabanebashi | TOEI | Oedo line | Minato ward | E-21 | ԉH | ` |
| Akado-shogakko-mae | TOEI | Nippori-Toneri liner | Arakawa ward | 03 | ԓywZO | r |
| Akasaka | Tokyo Metro | Chiyoda line | Minato ward | C-06 | ԍ | ` |
| Akasaka-mitsuke | Tokyo Metro | Ginza line | Minato ward | G-05 | ԍ〈 | ` |
| Akasaka-mitsuke | Tokyo Metro | Marunouchi line | Minato ward | M-13 | ԍ〈 | ` |
| Akayu | JR East | Yamagata shinkansen | Yamagata pref. | ԓ | R` | |
| Akebonobashi | TOEI | Shinjuku line | Shinjuku ward | S-03 | Vh | |
| Akigawa | JR East | Itsukaichi line | Tokyo pref. | H | s | |
| Akihabara | JR East | Yamanote line | Chiyoda ward | Ht | c | |
| Akihabara | JR East | Keihin-tohoku line | Chiyoda ward | Ht | c | |
| Akihabara | JR East | Sobu-chuo line | Chiyoda ward | Ht | c | |
| Akihabara | Tokyo Metro | Hibiya line | Chiyoda ward | H-16 | Ht | c |
| Akihabara | Tsukuba Express | Tsukuba Express line | Chiyoda ward | 01 | Ht | c |
| Akishima | JR East | Ome line | Tokyo pref. | s | ||
| Akita | JR East | Akita shinkansen | Akita pref. | Hc | Hc | |
| Akitsu | SEIBU | Ikebukuro line | Tokyo pref. | SI16 | H | s |
| Akiyama | HOKUSO | Hokuso line | Chiba pref. | HS04 | HR | t |
| Anamori-inari | KEIKYU | Kuko line | Ota ward | KK14 | c | |
| Anegasaki | JR East | Uchibo line | Chiba pref. | oP | t | |
| Annaka-haruna | JR East | Nagano shinkansen | Gunma pref. | Y | Qn | |
| Anshinzuka | KEIKYU | Honsen line | Kanagawa pref. | KK56 | j | _ސ쌧 |
| Aobadai | TOKYU | Denen-toshi line | Kanagawa pref. | DT20 | t | _ސ쌧 |
| Aoi | Tsukuba Express | Tsukuba Express line | Adachi ward | 06 | | |
| Aomi | Yurikamome | Yurikamome line | Koto ward | U-10 | C | ] |
| Aomono-yokocho | KEIKYU | Honsen line | Shinagawa ward | KK04 | | i |
| Aoto | KEISEI | Honsen line | Katsushika ward | KS09 | u | |
| Aoto | KEISEI | Oshiage line | Katsushika ward | KS09 | u | |
| Aoyama-icchome | TOEI | Oedo line | Minato ward | E-24 | R꒚ | ` |
| Aoyama-icchome | Tokyo Metro | Ginza line | Minato ward | G-04 | R꒚ | ` |
| Aoyama-icchome | Tokyo Metro | Hanzomon line | Minato ward | Z-03 | R꒚ | ` |
| Arai-yakushi-mae | SEIBU | Seibu-shinjuku line | Nakano ward | SS05 | VtO | |
| Araijuku | Saitama-kosoku | Saitama-kosoku line | Saitama pref. | Vh | ʌ | |
| Arakawa-icchu-mae | TOEI | Arakawa line | Arakawa ward | rꒆO | r | |
| Arakawa-kuyakusho-mae | TOEI | Arakawa line | Arakawa ward | rO | r | |
| Arakawa-nanachome | TOEI | Arakawa line | Arakawa ward | r쎵 | r | |
| Arakawa-nichome | TOEI | Arakawa line | Arakawa ward | r | r | |
| Arakawa-shako-mae | TOEI | Arakawa line | Arakawa ward | rԌɑO | r | |
| Arakawa-yuenchi-mae | TOEI | Arakawa line | Arakawa ward | rVnO | r | |
| Ariake | Yurikamome | Yurikamome line | Koto ward | U-12 | L | ] |
| Ariake-tennis-no-mori | Yurikamome | Yurikamome line | Koto ward | U-13 | LejX̐X | ] |
| Asa | JR West | Sanyo shinkansen | Yamaguchi pref. | R | ||
| Asagaya | JR East | Sobu-chuo line | Suginami ward | J | ||
| Asagaya | JR East | Chuo line | Suginami ward | J | ||
| Asaka | TOBU | Tojo line | Saitama pref. | TJ-12 | ʌ | |
| Asaka-dai | TOBU | Tojo line | Saitama pref. | TJ-13 | ʌ | |
| Asakusa | TOEI | Asakusa line | Taito ward | A-18 | 䓌 | |
| Asakusa | Tokyo Metro | Ginza line | Taito ward | G-19 | 䓌 | |
| Asakusa | TOBU | Isesaki line/Skytree line | Taito ward | TS-01 | 䓌 | |
| Asakusa | Tsukuba Express | Tsukuba Express line | Taito ward | 03 | 䓌 | |
| Asakusabashi | JR East | Sobu-chuo line | Taito ward | | 䓌 | |
| Asakusabashi | TOEI | Asakusa line | Taito ward | A-16 | | 䓌 |
| Ashigakubo | SEIBU | Seibu-chichibu line | Saitama pref. | SI34 | v | ʌ |
| Ashigara | ODAKYU | Odawara line | Kanagawa pref. | _ސ쌧 | ||
| Ashikaga-shi | TOBU | Isesaki line | Tochigi pref. | TI-15 | s | Ȗ، |
| Asukayama | TOEI | Arakawa line | Kita ward | R | k | |
| Atami | JR East | Tokaido line | Shizuoka pref. | MC | É | |
| Atami | JR Central | Tokaido shinkansen | Shizuoka pref. | MC | É | |
| Atsugi | ODAKYU | Odawara line | Kanagawa pref. | _ސ쌧 | ||
| Awajicho | Tokyo Metro | Marunouchi line | Chiyoda ward | M-19 | WH | c |
| Ayase | JR East | Joban line | Adachi ward | |||
| Ayase | Tokyo Metro | Chiyoda line | Adachi ward | C-19 | ||
| Azabu-juban | TOEI | Oedo line | Minato ward | E-22 | z\ | ` |
| Azabu-juban | Tokyo Metro | Nanboku line | Minato ward | N-04 | z\ | ` |
| Azamino | TOKYU | Denen-toshi line | Kanagawa pref. | DT16 | ݖ | _ސ쌧 |
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